Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THCA rs375647359 chr18:13824184 CGGGGCT/C 1.27E-5 501 31.42 33.4 50 KM Plot
THCA rs3759606 chr14:23565896 C/G 6.44E-15 495 31.68 32.35 12.97 KM Plot
THCA rs377142541 chr1:152912278 C/T 0.00014 499 31.42 34.43 37.7 KM Plot
THCA rs3772868 chr3:139251385 G/A 0.000114 500 31.47 33.08 19.83 KM Plot
THCA rs3774626 chr3:53899601 C/T 4.4E-6 494 31.47 30.63 24.75 KM Plot
THCA rs377651139 chr2:86954114 T/C 3.32E-9 499 32.27 27.7 14.73 KM Plot
THCA rs3786970 chr19:2141150 C/G 0.000116 485 32.9 31.9 31.43 KM Plot
THCA rs3794456 chr14:23545799 G/T 4.0E-15 503 31.7 31.47 12.97 KM Plot
THCA rs3810188 chr19:49573518 G/A 6.04E-7 499 31.47 32.37 20.77 KM Plot
THCA rs3810534 chr20:47247396 A/G 0 500 31.47 32.93 6.78 KM Plot
THCA rs3813347 chr6:133119778 G/A 6.86E-8 498 31.47 32.1 30.78 KM Plot
THCA rs3815840 chr2:86302103 A/G 7.36E-5 498 18.5 30.4 32.43 KM Plot
THCA rs3817991 chr20:47296365 G/C 3.69E-9 500 31.7 32.03 18.22 KM Plot
THCA rs3827041 chr20:47247161 G/A 0 499 31.47 33.1 7.77 KM Plot
THCA rs3827042 chr20:47319307 G/A 4.02E-9 501 31.53 32.07 18.22 KM Plot